4.0.0 org.ohdsi WebAPI war 2.8.1 WebAPI ${BUILD_NUMBER} UTF-8 1.5.22.RELEASE 4.2.0 2.2.1 5.5.0 5.4.2.Final 42.2.18 1.68 1.7.1 1.9.2 2.14 1.6.8 3.1.2 4.0.0 2.10.5 2.10.5.1 org.ohdsi.webapi.WebApi true true package 1.8 1.8 com.microsoft.sqlserver.jdbc.SQLServerDriver jdbc:sqlserver://serverName;databaseName=databaseName user password sql server dbo sql server com.microsoft.sqlserver.jdbc.SQLServerDriver jdbc:sqlserver://serverName userWithWritePrivs password classpath:db/migration/sqlserver ${datasource.ohdsi.schema} false ${datasource.ohdsi.schema} CDM_NAME 5 false {!complexphrase inOrder=true} 8.6.3 5 60 /etc/krb5.conf ${datasource.ohdsi.schema}.BATCH_ ISOLATION_READ_COMMITTED default DisabledSecurity 43200 http://localhost false http://localhost/Atlas/#/welcome http://localhost:8080/WebAPI/user/oauth/callback query http://localhost/index.html#/welcome/ cn={0},dc=example,dc=org ldap://localhost:389 (&(objectClass=person)(CN={0})) displayName givenName initials sn cn CN=Users,DC=example,DC=org CN=Users,DC=example,DC=org @example.org (&(objectClass=person)(cn=%s)) true 30000 public (&(objectClass=person)(userPrincipalName=%s)) displayname givenname initials sn cn casticket ${datasource.ohdsi.schema} ${datasource.url} ${datasource.driverClassName} ${datasource.username} ${datasource.password} select password from ${security.db.datasource.schema}.users where lower(email) = lower(?) true false true 3 10 10 false com:odysseusinc:atlas:sp true true true true true true true true true true SELECT 1 2000 5 1 5000 true authDataSource 8080 /WebAPI 1.17.1 2.25.1 600000 12 10000 https://localhost:8888/api/v1/analyze Basic YWRtaW5Ab2R5c3NldXNpbmMuY29tOnBhc3N3b3Jk http://localhost:8080/WebAPI/executionservice/callbacks/submission/{id}/status/update/{password} http://localhost:8080/WebAPI/executionservice/callbacks/submission/{id}/result/{password} 100 false PBEWithMD5AndDES OHDSI true false info info info info info info warn 10 20 2147483647 admin txt classpath:config/ehcache.xml true 30 3600000 false 3600000 34 36 * * false WebAPI ${basedir}/src/main/java ${basedir}/src/test/java ${basedir}/target/classes ${basedir}/target/test-classes src/main/resources true **/*.properties log4j.xml src/main/resources false **/*.* **/*.properties log4j.xml src/test/resources true **/*.properties src/test/resources false **/*.* **/*.properties pl.project13.maven git-commit-id-plugin 4.0.0 validate revision false false git.branch git.commit.id.abbrev org.codehaus.gmaven gmaven-plugin 1.5 add-git-branch-info generate-resources execute if (project.properties.getProperty("git.branch") == null) project.properties.setProperty("git.branch", "*"); if (project.properties.getProperty("git.commit.id.abbrev") == null) project.properties.setProperty("git.commit.id.abbrev", "*"); org.springframework.boot spring-boot-maven-plugin ${spring.boot.version} false org.ohdsi.webapi.WebApi ${git.branch} ${git.commit.id.abbrev} ${buildinfo.atlas.milestone.id} ${buildinfo.webapi.milestone.id} ${buildinfo.atlas.release.tag} ${buildinfo.webapi.release.tag} build-info repackage org.apache.maven.plugins maven-surefire-plugin 2.18.1 ${skipUnitTests} org.apache.maven.plugins maven-compiler-plugin 3.1 true -Xpkginfo:always org.apache.maven.plugins maven-war-plugin 3.3.1 false true org.apache.maven.plugins maven-failsafe-plugin 2.18.1 ${skipITtests} test integration-test **/IT*.java com.qmino miredot-plugin 2.2 ${miredot.phase} restdoc cHJvamVjdHxvcmcub2hkc2kuV2ViQVBJfDIwMjUtMDEtMDF8ZmFsc2V8LTEjTUN3Q0ZDZkowMkZrVmVSeVlBazZVbTBmNThIbE15SjRBaFEwcVZyRUZuamZMTzJ0KzFtR3E3U3lMMkFESHc9PQ== 200 always The service call has completed successfully. 401 Authorization Exception The user is not authorized to use this service. 412 put,post Invalid JSON/XML input. 500 always The service call has not succeeded.

api.html

ohdsi repo.ohdsi.org http://repo.ohdsi.org:8085/nexus/content/groups/public central https://repo.maven.apache.org/maven2 miredot MireDot Releases http://nexus.qmino.com/content/repositories/miredot org.springframework.boot spring-boot-dependencies ${spring.boot.version} pom import com.amazon.redshift redshift-jdbc4-no-awssdk 1.2.10.1009 com.fasterxml.jackson.core jackson-databind ${jackson.databind.version} com.fasterxml.jackson.core jackson-annotations com.fasterxml.jackson.core jackson-core com.fasterxml.jackson.core jackson-core ${jackson.version} com.fasterxml.jackson.core jackson-annotations ${jackson.version} org.springframework.boot spring-boot-starter org.springframework.boot spring-boot-starter-logging org.springframework.boot spring-boot-starter-web org.hibernate hibernate-validator com.fasterxml.jackson.core jackson-databind org.springframework.boot spring-boot-starter-tomcat provided org.springframework.boot spring-boot-starter-batch org.springframework.boot spring-boot-starter-jdbc org.springframework.boot spring-boot-starter-jersey org.hibernate hibernate-validator com.fasterxml.jackson.core jackson-databind com.fasterxml.jackson.core jackson-annotations com.fasterxml.jackson.core jackson-core org.springframework.boot spring-boot-starter-data-jpa org.springframework.boot spring-boot-starter-cache javax.cache cache-api org.ehcache ehcache 3.8.1 org.hibernate hibernate-core ${hibernate.version} org.hibernate hibernate-validator 5.4.2.Final org.hibernate hibernate-entitymanager ${hibernate.version} javax.servlet javax.servlet-api 3.1.0 provided org.ohdsi.sql SqlRender ${SqlRender.version} commons-dbutils commons-dbutils 1.6 commons-io commons-io 2.6 com.sun.xml.security xml-security-impl 1.0 org.springframework.boot spring-boot-starter-test ${spring.boot.version} test com.vaadin.external.google android-json org.apache.commons commons-lang3 3.9 org.flywaydb flyway-core ${flyway.version} org.apache.httpcomponents httpclient 4.5.13 commons-httpclient commons-httpclient 3.1 org.springframework.batch spring-batch-admin-manager 2.0.0.M1 freemarker org.freemarker commons-dbcp commons-dbcp com.fasterxml.jackson.core jackson-databind org.postgresql postgresql ${postgresql.version} jar com.microsoft.sqlserver mssql-jdbc 7.0.0.jre8 com.opencsv opencsv 3.7 jar org.eclipse.collections eclipse-collections-api 8.0.0 org.eclipse.collections eclipse-collections 8.0.0 org.apache.commons commons-collections4 4.1 jar org.apache.shiro shiro-core ${shiro.version} org.apache.shiro shiro-web ${shiro.version} org.apache.shiro shiro-spring ${shiro.version} com.github.waffle waffle-shiro 2.2.1 com.github.waffle waffle-jna ${waffle.version} net.java.dev.jna jna net.java.dev.jna jna-platform net.java.dev.jna jna ${jna.version} net.java.dev.jna jna-platform ${jna.version} io.jsonwebtoken jjwt 0.9.1 com.fasterxml.jackson.core jackson-databind io.buji buji-pac4j 5.0.1 org.pac4j pac4j-oauth ${pac4j.version} com.fasterxml.jackson.core jackson-databind org.pac4j pac4j-oidc ${pac4j.version} com.fasterxml.jackson.core jackson-databind org.pac4j pac4j-saml-opensamlv3 ${pac4j.version} org.ohdsi circe ${circe.version} com.fasterxml.jackson.core jackson-databind com.fasterxml.jackson.core jackson-annotations org.ohdsi hydra 0.0.11 org.ohdsi circe org.json json 20170516 org.ohdsi featureExtraction 3.1.0 org.ohdsi.sql SqlRender com.amazon.redshift redshift-jdbc4-no-awssdk org.springframework.security spring-security-crypto 4.2.3.RELEASE com.zaxxer HikariCP 3.3.1 com.google.code.gson gson org.jasypt jasypt-hibernate4 1.9.2 org.dbunit dbunit 2.7.0 test com.github.springtestdbunit spring-test-dbunit 1.3.0 test pl.pragmatists JUnitParams 1.1.0 test org.bouncycastle bcprov-jdk15on ${bouncycastle.version} com.odysseusinc.arachne arachne-common-utils ${arachne.version} com.odysseusinc.arachne execution-engine-commons ${arachne.version} com.fasterxml.jackson.core jackson-annotations com.odysseusinc logging ${arachne.version} org.hibernate hibernate-validator com.fasterxml.jackson.core jackson-databind com.fasterxml.jackson.core jackson-annotations com.odysseusinc.arachne arachne-scheduler ${arachne.version} org.hibernate hibernate-validator org.glassfish.jersey.media jersey-media-multipart ${jersey-media-multipart.version} org.springframework.ldap spring-ldap-core 2.3.2.RELEASE com.odysseusinc data-source-manager ${arachne.version} org.bouncycastle bcprov-jdk15 org.ohdsi standardized-analysis-specs 1.3.0 com.fasterxml.jackson.core jackson-core org.ohdsi standardized-analysis-utils 1.3.0 com.fasterxml.jackson.core jackson-core com.fasterxml.jackson.core jackson-databind com.fasterxml.jackson.core jackson-annotations org.ohdsi SkeletonCohortCharacterization 1.2.0 org.ohdsi standardized-analysis-api org.ohdsi.sql SqlRender org.ohdsi circe org.ohdsi featureExtraction org.ohdsi.sql SqlRender com.cosium.spring.data spring-data-jpa-entity-graph 1.11.03 org.pac4j pac4j-cas ${pac4j.version} com.fasterxml.jackson.core jackson-databind org.apache.solr solr-solrj ${solr.version} jar com.qmino miredot-annotations 1.5.0 com.atlassian.commonmark commonmark 0.15.2 org.freemarker freemarker 2.3.30 com.atlassian.commonmark commonmark-ext-gfm-tables 0.15.2 com.opentable.components otj-pg-embedded 0.13.1 test com.github.mjeanroy dbunit-plus 2.0.1 test log4j log4j 1.2.17 webapi-oracle oracle.jdbc.OracleDriver jdbc:oracle:thin:@127.0.0.1:1521/ohdsi user password oracle ${datasource.driverClassName} ${datasource.url} user pass OHDSI ${datasource.ohdsi.schema} ${datasource.ohdsi.schema} ${datasource.ohdsi.schema}.BATCH_ classpath:db/migration/oracle org.hibernate.dialect.Oracle10gDialect ${datasource.url} ${datasource.driverClassName} ${datasource.username} ${datasource.password} select password from ${security.db.datasource.schema}.user where \ lower(email) = lower(?) com.oracle.database.jdbc ojdbc8 19.8.0.0 webapi-postgresql org.postgresql.Driver jdbc:postgresql://54.209.111.128:5432/vocabularyv5 USER PASS postgresql ohdsi ${datasource.driverClassName} ${datasource.url} userWithWritesToOhdsiSchema PASS ${datasource.ohdsi.schema} ${datasource.ohdsi.schema} classpath:db/migration/postgresql ${datasource.ohdsi.schema}.BATCH_ org.hibernate.dialect.PostgreSQL9Dialect ${datasource.url} ${datasource.driverClassName} ${datasource.username} ${datasource.password} select password from ${security.db.datasource.schema}.users_data where \ lower(email) = lower(?) webapi-docker unknown unknown true none true 11 11 org.postgresql.Driver jdbc:postgresql://54.209.111.128:5432/vocabularyv5 USER PASS postgresql ohdsi ${datasource.driverClassName} ${datasource.url} userWithWritesToOhdsiSchema PASS ${datasource.ohdsi.schema} ${datasource.ohdsi.schema} classpath:db/migration/postgresql ${datasource.ohdsi.schema}.BATCH_ org.hibernate.dialect.PostgreSQL9Dialect ${datasource.url} ${datasource.driverClassName} ${datasource.username} ${datasource.password} select password from ${security.db.datasource.schema}.users_data where \ lower(email) = lower(?) central https://repo.maven.apache.org/maven2 ohdsi repo.ohdsi.org http://repo.ohdsi.org:8085/nexus/content/groups/public webapi-mssql com.microsoft.sqlserver.jdbc.SQLServerDriver jdbc:sqlserver://server USER PASS sql server OHDSI_schema ${datasource.driverClassName} ${datasource.url} FLYWAY_USER FLYWAY_PASS ${datasource.ohdsi.schema} ${datasource.ohdsi.schema} classpath:db/migration/sqlserver ${datasource.ohdsi.schema}.BATCH_ org.hibernate.dialect.SQLServer2012Dialect ${datasource.url} ${datasource.driverClassName} ${datasource.username} ${datasource.password} select password from ${security.db.datasource.schema}.user where \ lower(email) = lower(?) webapi-netezza true org.netezza nzjdbc 1.0 org.apache.maven.plugins maven-install-plugin 2.5.2 netezza-jdbc initialize install-file org.netezza nzjdbc 1.0 jar ${basedir}/src/main/extras/netezza/nzjdbc.jar webapi-impala true 2.6.15 ...path/to/impala/jdbc/drivers... com.cloudera ImpalaJDBC42 ${impala.driver.version} org.apache.maven.plugins maven-install-plugin 2.5.2 impala-jdbc initialize install-file com.cloudera ImpalaJDBC42 ${impala.driver.version} jar ${impala.classpath}/ImpalaJDBC42.jar webapi-bigquery true ${basedir}/src/main/extras/bigquery com.google.api-client google-api-client 1.28.0 com.google.apis google-api-services-bigquery v2-rev20200415-1.30.9 com.google.cloud google-cloud-bigquery 1.2.11 com.google.http-client google-http-client 1.28.0 com.google.http-client google-http-client-jackson2 1.28.0 com.google.oauth-client google-oauth-client 1.28.0 com.google.cloud google-cloud-bigquerystorage 0.101.0-beta com.google.auth google-auth-library-oauth2-http 0.16.2 com.google.auth google-auth-library-credentials 0.16.2 org.apache.maven.plugins maven-install-plugin 2.5.2 google-api-client initialize install-file com.google.api-client google-api-client 1.28.0 jar ${bigquery.classpath}/google-api-client-1.28.0.jar google-api-services-bigquery initialize install-file com.google.apis google-api-services-bigquery v2-rev20200415-1.30.9 jar ${bigquery.classpath}/google-api-services-bigquery-v2-rev20200415-1.30.9.jar google-cloud-bigquery initialize install-file com.google.cloud google-cloud-bigquery 1.2.11 jar ${bigquery.classpath}/GoogleBigQueryJDBC42.jar google-http-client initialize install-file com.google.http-client google-http-client 1.28.0 jar ${bigquery.classpath}/google-http-client-1.28.0.jar google-http-client-jackson2 initialize install-file com.google.http-client google-http-client-jackson2 1.28.0 jar ${bigquery.classpath}/google-http-client-jackson2-1.28.0.jar google-oauth-client initialize install-file com.google.oauth-client google-oauth-client 1.28.0 jar ${bigquery.classpath}/google-oauth-client-1.28.0.jar google-cloud-bigquerystorage initialize install-file com.google.cloud google-cloud-bigquerystorage 0.101.0-beta jar ${bigquery.classpath}/google-cloud-bigquerystorage-0.101.0-beta.jar webapi-hive org.apache.hive hive-jdbc ${hive-jdbc.version} tomcat * org.apache.tomcat * org.eclipse.jetty * slf4j-log4j12 org.slf4j log4j log4j servlet-api javax.servlet com.zaxxer HikariCP com.zaxxer HikariCP-java7 javax.ws.rs javax.ws.rs-api com.sun.jersey jersey-server com.sun.jersey jersey-core com.sun.jersey jersey-client com.sun.jersey jersey-json com.tdunning json com.fasterxml.jackson.core jackson-databind com.fasterxml.jackson.core jackson-annotations com.fasterxml.jackson.core jackson-core com.sun.jersey jersey-server 1.19.4 com.sun.jersey jersey-core 1.19.4 javax.ws.rs jsr311-api com.sun.jersey jersey-client 1.19.4 com.sun.jersey jersey-json 1.19.4 webapi-gis 1.0.1-SNAPSHOT true org.ohdsi atlasgis ${atlasgis.version}